SNP Profiles of MAN 15/2 [BRA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	GG	CC	AA	TT	TT	CC	AA	CC	AA	TT	AA	GG	TT
1._RUQ_86	_	CG	_	_	_	GT	_	AG	_	AA	_	_	_	_
2._MAN_15_/2_[BRA]	AA	CG	CC	CC	TT	GT	CT	AG	CT	AA	_	AA	GG	CT
3._RUQ_86	AA	CG	CC	_	_	-	_	_	CT	AA	_	_	_	_
4._MAN_15_/2_[BRA]	AA	CG	CC	CC	TT	GT	CT	AG	CT	AA	CT	AA	GG	CT
5._MAN15/2[BRA]	_	CG	_	_	_	_	_	_	CT	_	CT	_	_	_
6._RUQ_86	AG	CG	CC	CC	TT	GT	CT	AG	CT	AA	CT	AA	GG	CT
7._MAN_15_/2_[BRA]	AA	CG	CC	_	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
8._MAN_15_/2_[BRA]	AA	CG	CC	_	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
9._MAN_15_/2_[BRA]	AA	CG	CC	_	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
10._GC-05-072-2-23	AA	CG	CC	_	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
11._GC-05-072-2-23	AA	CG	CC	_	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
12._GC-05-072-2-23	AA	CG	CC	_	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
13._MAN_15_/2_[BRA]	AA	CG	CC	CC	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
14._MAN_15_/2_[BRA]	AA	CG	CC	CC	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
15._GC-05-072-2-23	AA	CG	CC	CC	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
16._GC-05-072-2-23	AA	CG	CC	CC	TT	GT	CT	GG	CT	AA	CT	AA	GG	CT
17._RUQ_86	AA	CG	GG	CC	AA	AA	_	AG	AG	AA	AG	AA	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	GG	GG	AA	CT	AA	CG	TT	CT	CC	AA	GG	AA	CC
1._RUQ_86	_	GG	GG	AA	_	AC	GG	_	_	AC	_	_	_	_
2._MAN_15_/2_[BRA]	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG	GG	AA	TT
3._RUQ_86	TT	GG	GG	_	CC	AC	CG	GT	CC	AC	AG	_	AA	TT
4._MAN_15_/2_[BRA]	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG	GG	AA	TT
5._MAN15/2[BRA]	CT	CC	_	_	_	AC	CG	_	_	_	_	_	AA	_
6._RUQ_86	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG	GG	AA	TT
7._MAN_15_/2_[BRA]	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
8._MAN_15_/2_[BRA]	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
9._MAN_15_/2_[BRA]	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
10._GC-05-072-2-23	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
11._GC-05-072-2-23	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
12._GC-05-072-2-23	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
13._MAN_15_/2_[BRA]	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
14._MAN_15_/2_[BRA]	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
15._GC-05-072-2-23	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
16._GC-05-072-2-23	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG	GG	AA	TT
17._RUQ_86	AG	CC	CC	_	GG	AC	CG	AC	_	AC	_	GG	AA	AA

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_Input profile	GG	CG	AC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_86	AG	_	_	_	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X
2._MAN_15_/2_[BRA]	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_86	AG	CG	AC	CT	GT	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X
4._MAN_15_/2_[BRA]	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._MAN15/2[BRA]	AG	CG	AC	CT	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_86	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._MAN_15_/2_[BRA]	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
8._MAN_15_/2_[BRA]	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
9._MAN_15_/2_[BRA]	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-072-2-23	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-072-2-23	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-05-072-2-23	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
13._MAN_15_/2_[BRA]	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
14._MAN_15_/2_[BRA]	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-05-072-2-23	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-05-072-2-23	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_86	AG	CG	AC	AG	AC	CC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: MAN_15_/2_[BRA]

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: La Montaña Lot 6 Row 53 46-48

Dapeng Zhang, 2016

1._MAN_15_/2_[BRA] RUQ_86

70.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._MAN_15_/2_[BRA]

70 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/476 T2

Dapeng Zhang, 2016

3._MAN_15_/2_[BRA] RUQ_86

69.6 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._MAN_15_/2_[BRA]

69.4 %
36 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0297

Dapeng Zhang, 2016

5._MAN_15_/2_[BRA] MAN15/2[BRA]

69.2 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

6._MAN_15_/2_[BRA] RUQ_86

68.1 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

7._MAN_15_/2_[BRA]

67.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 3 > FP

Dapeng Zhang, 2016

8._MAN_15_/2_[BRA]

67.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 1 > FP

Dapeng Zhang, 2016

9._MAN_15_/2_[BRA]

67.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._MAN_15_/2_[BRA] GC-05-072-2-23

67.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._MAN_15_/2_[BRA] GC-05-072-2-23

67.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._MAN_15_/2_[BRA] GC-05-072-2-23

67.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

13._MAN_15_/2_[BRA]

65.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 5 > FP

Dapeng Zhang, 2016

14._MAN_15_/2_[BRA]

65.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 2 > FP

Dapeng Zhang, 2016

15._MAN_15_/2_[BRA] GC-05-072-2-23

65.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

16._MAN_15_/2_[BRA] GC-05-072-2-23

65.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

17._MAN_15_/2_[BRA] RUQ_86

43.8 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1350	5	TcSNP1270
6	TcSNP1253	7	TcSNP1165	8	TcSNP1062	9	TcSNP1060	10	TcSNP998
11	TcSNP994	12	TcSNP953	13	TcSNP929	14	TcSNP917	15	TcSNP891
16	TcSNP872	17	TcSNP723	18	TcSNP645	19	TcSNP619	20	TcSNP591
21	TcSNP577	22	TcSNP560	23	TcSNP534	24	TcSNP529	25	TcSNP469
26	TcSNP429	27	TcSNP372	28	TcSNP242	29	TcSNP230	30	TcSNP226
31	TcSNP193	32	TcSNP151	33	TcSNP150	34	TcSNP144	35	TcSNP32
36	TcSNP25